atom.type
Type |
Status |
|---|---|
CML extraction template |
|
HTML5 representation |
|
Attribute |
Value |
|---|---|
source |
Amber topology atom type section |
id |
atom.type |
name |
Amber topology atom type section |
pattern |
\s*%FLAG AMBER_ATOM_TYPE.* |
endPattern |
.*\S\s*$%.* |
endPattern2 |
~ |
endOffset |
1 |
xml:base |
sections/atom.type.xml |
Input
%FLAG AMBER_ATOM_TYPE
%FORMAT(20a4)
M1 o os o os o oh Y1 Y2 Y3 Y4 c3 c3 ce cf c3 cf c3 c3 cd
cd c c3 cf cc c cc cc c c3 cf cc cd cd cd cd c3 cc cc cf
c3 c3 cf c3 c3 c2 c3 hc hc hc hc hc hc hc hc hc ha hc hc hc
ha hc hc hc ha h1 h1 h1 hc hc ha hc hc hc hc hc hc ha ha h1
h1 h1 ho OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW
HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW
HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW
OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW
HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW
HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW
OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW
HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW HW HW OW
HW HW OW HW HW OW HW HW
%FLAG TREE_CHAIN_CLASSIFICATION
Output text
1<comment class="example.output" id="atom.type">
2 <module cmlx:templateRef="atom.type">
3 <array dataType="xsd:string" delimiter="|" dictRef="am:atomType" size="7628">M1|o|os|o|os|o|oh|Y1|Y2|Y3|Y4|c3|c3|ce|cf|c3|cf|c3|c3|cd|cd|c|c3|cf|cc|c|cc|cc|c|c3|cf|cc|cd|cd|cd|cd|c3|cc|cc|cf|c3|c3|cf|c3|c3|c2|c3|hc|hc|hc|hc|hc|hc|hc|hc|hc|ha|hc|hc|hc|ha|hc|hc|hc|ha|h1|h1|h1|hc|hc|ha|hc|hc|hc|hc|hc|hc|ha|ha|h1|h1|h1|ho|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW|OW|HW|HW</array>
4 </module>
5 </comment>
Template definition
1<record repeat="2" />
2<record repeat="*">{1_20A,am:atomType}</record>
3<transform process="joinArrays" xpath=".//cml:array" />
4<transform process="pullup" xpath=".//cml:array" />
5<transform process="delete" xpath=".//cml:list" />