input.file ​
Implementation level ​
| Type | Status |
|---|---|
| CML extraction template | |
| HTML5 representation |
Template attributes ​
| Attribute | Value |
|---|---|
| source | Amber log |
| id | input.file |
| name | Amber input file section |
| pattern | \s*Here\sis\sthe\sinput\sfile:.* |
| endPattern | \s*$\s* |
| endPattern2 | \s*\/\s*$\s* |
| endOffset | 1 |
| xml:base | inputfile.xml |
Input ​
Here is the input file:
Production
&cntrl
imin=0,
ntx=5,
irest=1,
nstlim=50000000,
dt=0.002,
ntf=2,
ntc=2,
temp0=300.0,
ntpr=100000,
ntwx=100000,
cut=10.0,
ntb=2,
ntp=1,
barostat=2,
ntt=3,
gamma_ln=2.0,
ig=-1,
/
Output text ​
xml
<comment class="example.output" id="input.file">
<module cmlx:templateRef="input.file">
<list cmlx:templateRef="lines">
<scalar dataType="xsd:string" dictRef="cc:inputLine">Production</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">&cntrl</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">imin=0,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ntx=5,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">irest=1,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">nstlim=50000000,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">dt=0.002,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ntf=2,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ntc=2,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">temp0=300.0,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ntpr=100000,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ntwx=100000,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">cut=10.0,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ntb=2,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ntp=1,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">barostat=2,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ntt=3,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">gamma_ln=2.0,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">ig=-1,</scalar>
<scalar dataType="xsd:string" dictRef="cc:inputLine">/</scalar>
</list>
</module>
</comment>Template definition ​
xml
<record repeat="2" />
<record id="lines" repeat="*">{X,cc:inputLine}</record>
<transform process="delete" xpath=".//cml:list[count(*) = 0]" />
<transform process="delete" xpath=".//cml:list[count(*) = 0]" />