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l601.orbital.closedshell ​

Implementation level ​

TypeStatus
CML extraction template
HTML5 representation

Template attributes ​

AttributeValue
sourceGaussian log
idl601.orbital.closedshell
namel601.orbital.closedshell
pattern\s+Molecular\sOrbital\sCoefficients.*
endPattern\s+DENSITY\s+MATRIX.*
endPattern2\s+Density\s+Matrix.*
endOffset0
repeat*
xml:basel601/l601.orbital.closedshell.xml

Input ​

     Molecular Orbital Coefficients
                           1         2         3         4         5
                        (A)--O    (A)--O    (A)--O    (A)--O    (A)--O
     EIGENVALUES --   -77.32978 -19.20031 -19.19990 -19.19861 -19.19814
   1 1   O  1S         -0.00003  -0.00093   0.99516  -0.00551  -0.00336
   2        2S         -0.00033  -0.00004   0.03090   0.00008   0.00012
   3        2PX         0.00001   0.00000  -0.00057  -0.00001   0.00000
   4        2PY        -0.00001  -0.00001   0.00059  -0.00002   0.00012
   5        2PZ         0.00000   0.00003  -0.00070  -0.00011  -0.00006
   6        3S          0.00078   0.00001  -0.02247  -0.00069  -0.00067
   7        3PX        -0.00034   0.00007   0.00050   0.00023   0.00018
   8        3PY         0.00034   0.00004  -0.00067  -0.00005  -0.00097
   9        3PZ        -0.00042  -0.00017   0.00012   0.00101   0.00066
  10 2   W  1S          0.00011   0.00005  -0.00012   0.00026   0.00021
  11        2S          0.00006  -0.00005   0.00038   0.00014   0.00011
  12        3S         -0.00006  -0.00169   0.00124  -0.00068  -0.00039
  13        4PX        -0.00002   0.00010   0.00017  -0.00004  -0.00006
  14        4PY         0.00000  -0.00003  -0.00002   0.00001  -0.00003
  15        4PZ         0.00000  -0.00015   0.00006   0.00004   0.00000
  16        5PX         0.00014   0.00116  -0.00182   0.00022   0.00000
  17        5PY        -0.00018   0.00031  -0.00006  -0.00005  -0.00096
  18        5PZ         0.00031  -0.00086   0.00003   0.00101   0.00037
  19        6PX         0.00002   0.00023  -0.00034   0.00010   0.00014
  20        6PY         0.00001  -0.00009  -0.00008  -0.00003  -0.00003
  21        6PZ         0.00007  -0.00154  -0.00036  -0.00001   0.00025
  22        7D 0       -0.00002  -0.00002   0.00010  -0.00002  -0.00005
  23        7D+1        0.00002   0.00003  -0.00008   0.00011   0.00007
  24        7D-1       -0.00001  -0.00007   0.00002   0.00000  -0.00002
  25        7D+2        0.00005   0.00004  -0.00016   0.00008   0.00004
  26        7D-2       -0.00002   0.00003   0.00004  -0.00003  -0.00011
  27        8D 0        0.00003  -0.00073  -0.00102  -0.00015   0.00030
  28        8D+1       -0.00028   0.00081  -0.00006  -0.00050  -0.00043
  29        8D-1        0.00011  -0.00030   0.00010   0.00003   0.00033
  30        8D+2       -0.00009  -0.00025   0.00177  -0.00035  -0.00008
  31        8D-2        0.00019  -0.00023  -0.00013   0.00027   0.00048
  32 3   O  1S          0.00000  -0.00001   0.00020  -0.00005  -0.00006
  33        2S          0.00000   0.00001   0.00015  -0.00003  -0.00004
  34        2PX         0.00000   0.00001   0.00002  -0.00001  -0.00001
  35        2PY         0.00001  -0.00001   0.00002   0.00001   0.00001
  36        2PZ        -0.00001  -0.00003  -0.00003  -0.00001  -0.00001
  37        3S          0.00003  -0.00024  -0.00072   0.00016   0.00022
  38        3PX         0.00001  -0.00002   0.00000   0.00005   0.00004
  39        3PY        -0.00004   0.00003  -0.00012  -0.00005  -0.00001
  40        3PZ         0.00005   0.00006   0.00018   0.00002   0.00006
  41 4   O  1S         -0.00001  -0.00007   0.00019   0.00023  -0.00010
  42        2S         -0.00011  -0.00007   0.00015   0.00019  -0.00008
  43        2PX         0.00001  -0.00003  -0.00013  -0.00017   0.00003
  44        2PY        -0.00002   0.00001  -0.00001  -0.00001  -0.00006
  45        2PZ         0.00000  -0.00004   0.00010  -0.00005  -0.00001
  46        3S          0.00042   0.00026   0.00004  -0.00008   0.00018
  47        3PX        -0.00014   0.00014   0.00060   0.00086  -0.00023
  48        3PY         0.00015  -0.00005   0.00011   0.00006   0.00037
  49        3PZ         0.00004   0.00023  -0.00053   0.00039   0.00004
  50 5   W  1S          0.00010   0.00003   0.00019  -0.00012   0.00021
  51        2S          0.00005   0.00004   0.00010   0.00040   0.00011
  52        3S         -0.00020   0.00006  -0.00062   0.00220  -0.00054
  53        4PX        -0.00001   0.00001  -0.00005   0.00014  -0.00006
  54        4PY         0.00000  -0.00001   0.00001  -0.00002  -0.00004
  55        4PZ         0.00000   0.00003  -0.00002  -0.00005   0.00000
  56        5PX         0.00006   0.00001  -0.00016  -0.00197  -0.00009
  57        5PY        -0.00016  -0.00009   0.00002   0.00005  -0.00089
  58        5PZ        -0.00034   0.00014  -0.00084   0.00086  -0.00052
  59        6PX         0.00005  -0.00059  -0.00001  -0.00039   0.00020
  60        6PY        -0.00002   0.00026   0.00001   0.00003  -0.00001
  61        6PZ        -0.00002  -0.00055  -0.00016   0.00023  -0.00004
  62        7D 0        0.00000   0.00003   0.00005   0.00003   0.00001
  63        7D+1       -0.00005   0.00000  -0.00013   0.00016  -0.00011
  64        7D-1        0.00001  -0.00001   0.00001  -0.00002   0.00005
  65        7D+2        0.00004  -0.00001   0.00003  -0.00012   0.00002
  66        7D-2       -0.00001   0.00000  -0.00002   0.00005  -0.00008
  67        8D 0       -0.00017  -0.00005  -0.00041  -0.00061  -0.00010
  68        8D+1        0.00026   0.00004   0.00047  -0.00125   0.00062
  69        8D-1       -0.00013  -0.00002  -0.00007  -0.00006  -0.00040
  70        8D+2        0.00000   0.00004  -0.00021   0.00150   0.00004
  71        8D-2        0.00012   0.00006   0.00027  -0.00015   0.00026
  72 6   O  1S          0.00000   0.00000  -0.00007   0.00023  -0.00007
  73        2S          0.00000   0.00000  -0.00005   0.00015  -0.00004
  74        2PX         0.00000   0.00000  -0.00001   0.00003  -0.00001
  75        2PY         0.00001   0.00000   0.00001   0.00002   0.00000
  76        2PZ         0.00001   0.00001   0.00001   0.00002   0.00002
  77        3S          0.00004   0.00001   0.00024  -0.00069   0.00024
  78        3PX        -0.00001   0.00000   0.00004  -0.00008   0.00001
  79        3PY        -0.00003  -0.00002  -0.00007  -0.00011   0.00001
  80        3PZ        -0.00005  -0.00004  -0.00004  -0.00018  -0.00008
                           6         7         8         9        10
                        (A)--O    (A)--O    (A)--O    (A)--O    (A)--O
     EIGENVALUES --   -19.19802 -19.19706 -19.17594 -19.17586 -19.17582
   1 1   O  1S         -0.00238  -0.00326  -0.00005  -0.00004   0.00005
   2        2S          0.00011   0.00013   0.00002   0.00002  -0.00004
   3        2PX        -0.00011  -0.00006  -0.00001   0.00000  -0.00001
   4        2PY         0.00001   0.00004   0.00000   0.00000   0.00004
   5        2PZ        -0.00005   0.00017  -0.00001  -0.00001   0.00000
   6        3S         -0.00057  -0.00056  -0.00016  -0.00014   0.00023
   7        3PX         0.00098   0.00022   0.00003   0.00003  -0.00001
   8        3PY        -0.00023  -0.00024  -0.00003  -0.00003  -0.00025
   9        3PZ         0.00055  -0.00107   0.00005   0.00009  -0.00001
  10 2   W  1S         -0.00005  -0.00030   0.00003   0.00001  -0.00007
  11        2S         -0.00008  -0.00013   0.00001   0.00000  -0.00004
  12        3S          0.00013   0.00325  -0.00015  -0.00006   0.00012
  13        4PX         0.00001  -0.00009   0.00000   0.00001   0.00000
  14        4PY         0.00003   0.00005   0.00000   0.00000  -0.00002
  15        4PZ        -0.00002   0.00010   0.00000   0.00000   0.00001
  16        5PX         0.00025  -0.00162   0.00008   0.00004  -0.00023
  17        5PY         0.00061   0.00098  -0.00003  -0.00003  -0.00041
  18        5PZ        -0.00056   0.00174   0.00002  -0.00005   0.00018
  19        6PX         0.00007  -0.00040  -0.00009  -0.00009  -0.00002
  20        6PY         0.00000  -0.00013   0.00003   0.00002   0.00013
  21        6PZ         0.00000   0.00044   0.00006   0.00019   0.00002
  22        7D 0        0.00005   0.00008  -0.00001   0.00000   0.00000
  23        7D+1       -0.00004   0.00003   0.00001  -0.00002   0.00001
  24        7D-1       -0.00001   0.00000   0.00000   0.00000   0.00000
  25        7D+2       -0.00006  -0.00001   0.00001   0.00000   0.00000
  26        7D-2        0.00005   0.00003   0.00000   0.00000  -0.00001
  27        8D 0        0.00006  -0.00013   0.00006   0.00003  -0.00010
  28        8D+1        0.00049  -0.00098  -0.00006   0.00002  -0.00013
  29        8D-1       -0.00009   0.00035   0.00000   0.00003   0.00006
  30        8D+2       -0.00006   0.00020  -0.00010  -0.00002   0.00011
  31        8D-2       -0.00045  -0.00055   0.00006   0.00000   0.00020
  32 3   O  1S          0.00003  -0.00006  -0.00019  -0.00011  -0.00013
  33        2S          0.00002  -0.00003  -0.00002  -0.00001  -0.00001
  34        2PX         0.00001   0.00001   0.00000   0.00000   0.00000
  35        2PY        -0.00001  -0.00001   0.00000   0.00000   0.00000
  36        2PZ         0.00001  -0.00001   0.00000   0.00000   0.00000
  37        3S         -0.00010   0.00019   0.00007   0.00003   0.00002
  38        3PX        -0.00004  -0.00006   0.00001   0.00000  -0.00001
  39        3PY         0.00006   0.00005  -0.00001   0.00000  -0.00002
  40        3PZ        -0.00008   0.00006   0.00001   0.00000   0.00002
  41 4   O  1S          0.00011  -0.00010  -0.00007  -0.00015  -0.00011
  42        2S          0.00009  -0.00009  -0.00003  -0.00006  -0.00004
  43        2PX        -0.00001   0.00003   0.00000   0.00003   0.00000
  44        2PY         0.00005   0.00000   0.00000   0.00000  -0.00002
  45        2PZ         0.00000  -0.00002   0.00000   0.00001   0.00000
  46        3S         -0.00042   0.00035   0.00013   0.00017   0.00015
  47        3PX         0.00006  -0.00014  -0.00003  -0.00018   0.00000
  48        3PY        -0.00029   0.00000   0.00004   0.00004   0.00012
  49        3PZ        -0.00003   0.00022  -0.00003  -0.00008   0.00001
  50 5   W  1S         -0.00003   0.00000  -0.00007  -0.00049  -0.00010
  51        2S         -0.00008  -0.00001  -0.00004  -0.00030  -0.00006
  52        3S         -0.00018   0.00009   0.00022   0.00075   0.00022
  53        4PX         0.00003   0.00001  -0.00001  -0.00002  -0.00001
  54        4PY         0.00002   0.00000   0.00000   0.00001  -0.00001
  55        4PZ         0.00002   0.00001  -0.00001   0.00000  -0.00001
  56        5PX         0.00067   0.00015  -0.00031  -0.00117  -0.00032
  57        5PY         0.00043   0.00001   0.00005   0.00040  -0.00034
  58        5PZ         0.00057   0.00021  -0.00025  -0.00078  -0.00012
  59        6PX         0.00002   0.00013   0.00004   0.00019   0.00002
  60        6PY         0.00001  -0.00003  -0.00003   0.00007   0.00010
  61        6PZ        -0.00004  -0.00002   0.00014   0.00008   0.00011
  62        7D 0        0.00000  -0.00002   0.00000   0.00000   0.00000
  63        7D+1        0.00008   0.00001   0.00000  -0.00008  -0.00001
  64        7D-1        0.00000   0.00001   0.00000   0.00003   0.00000
  65        7D+2       -0.00002   0.00001  -0.00001  -0.00002  -0.00001
  66        7D-2        0.00004   0.00000   0.00000   0.00005  -0.00001
  67        8D 0        0.00042   0.00016  -0.00016  -0.00024  -0.00013
  68        8D+1       -0.00046   0.00009   0.00006   0.00096   0.00003
  69        8D-1        0.00023  -0.00001  -0.00004  -0.00015  -0.00010
  70        8D+2       -0.00022  -0.00011   0.00013   0.00000   0.00012
  71        8D-2       -0.00028   0.00001  -0.00004  -0.00017   0.00014
  72 6   O  1S          0.00006  -0.00002  -0.00017  -0.00348  -0.00044
  73        2S          0.00003  -0.00001  -0.00001  -0.00020  -0.00002
  74        2PX         0.00000   0.00000   0.00000  -0.00001   0.00000
  75        2PY        -0.00001   0.00000   0.00000   0.00000   0.00000
  76        2PZ        -0.00002   0.00000   0.00000   0.00000   0.00000
  77        3S         -0.00016   0.00007   0.00001   0.00059   0.00004
  78        3PX         0.00000   0.00000  -0.00002  -0.00001  -0.00002
  79        3PY         0.00004   0.00000   0.00000   0.00001  -0.00002
  80        3PZ         0.00010   0.00001  -0.00002   0.00002  -0.00001
      DENSITY MATRIX.       

Output text ​

xml
<comment class="example.output" id="l601.orbital.closedshell">
        <module cmlx:lineCount="167" cmlx:templateRef="l601.orbital.closedshell">
           <array dataType="xsd:integer" size="10" dictRef="cc:serial">1 2 3 4 5 6 7 8 9 10</array>
           <array delimiter="|" dataType="xsd:string" size="10" dictRef="cc:occupation">|(A)--O|(A)--O|(A)--O|(A)--O|(A)--O|(A)--O|(A)--O|(A)--O|(A)--O|(A)--O|</array>
           <array dataType="xsd:double" size="10" dictRef="cc:eigenvalues">-77.32978 -19.20031 -19.1999 -19.19861 -19.19814 -19.19802 -19.19706 -19.17594 -19.17586 -19.17582</array>
           <matrix rows="80" columns="10" dataType="xsd:double" dictRef="g:orbitalcoeff">-3.0E-5 -9.3E-4 0.99516 -0.00551 -0.00336 -0.00238 -0.00326 -5.0E-5 -4.0E-5 5.0E-5 -3.3E-4 -4.0E-5 0.0309 8.0E-5 1.2E-4 1.1E-4 1.3E-4 2.0E-5 2.0E-5 -4.0E-5 1.0E-5 0.0 -5.7E-4 -1.0E-5 0.0 -1.1E-4 -6.0E-5 -1.0E-5 0.0 -1.0E-5 -1.0E-5 -1.0E-5 5.9E-4 -2.0E-5 1.2E-4 1.0E-5 4.0E-5 0.0 0.0 4.0E-5 0.0 3.0E-5 -7.0E-4 -1.1E-4 -6.0E-5 -5.0E-5 1.7E-4 -1.0E-5 -1.0E-5 0.0 7.8E-4 1.0E-5 -0.02247 -6.9E-4 -6.7E-4 -5.7E-4 -5.6E-4 -1.6E-4 -1.4E-4 2.3E-4 -3.4E-4 7.0E-5 5.0E-4 2.3E-4 1.8E-4 9.8E-4 2.2E-4 3.0E-5 3.0E-5 -1.0E-5 3.4E-4 4.0E-5 -6.7E-4 -5.0E-5 -9.7E-4 -2.3E-4 -2.4E-4 -3.0E-5 -3.0E-5 -2.5E-4 -4.2E-4 -1.7E-4 1.2E-4 0.00101 6.6E-4 5.5E-4 -0.00107 5.0E-5 9.0E-5 -1.0E-5 1.1E-4 5.0E-5 -1.2E-4 2.6E-4 2.1E-4 -5.0E-5 -3.0E-4 3.0E-5 1.0E-5 -7.0E-5 6.0E-5 -5.0E-5 3.8E-4 1.4E-4 1.1E-4 -8.0E-5 -1.3E-4 1.0E-5 0.0 -4.0E-5 -6.0E-5 -0.00169 0.00124 -6.8E-4 -3.9E-4 1.3E-4 0.00325 -1.5E-4 -6.0E-5 1.2E-4 -2.0E-5 1.0E-4 1.7E-4 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           </list>
        </module>     
    </comment>

Template definition ​

xml
<record repeat="1" />
<templateList>  <template id="coeff" pattern="\s&#123;20,&#125;\d+.*" endPattern=".*$\s&#123;20,&#125;\d+.*" endPattern2="~" endOffset="1" repeat="*">    <record id="serial">&#123;1_5I,cc:serial&#125;</record>    <record id="occupation">&#123;1_5A,cc:occupation&#125;</record>    <record id="eigenvalues">\s+.*\-\-&#123;1_5F,cc:eigenvalues&#125;</record>    <record id="row" repeat="*">&#123;I,cc:serial&#125;&#123;X,x:label&#125;\s&#123;7,&#125;&#123;1_5F,x:floatArr&#125;</record>    
        </template>       
    </templateList>
<transform process="joinArrays" xpath=".//cml:array[@dictRef='cc:serial']" />
<transform process="joinArrays" xpath=".//cml:array[@dictRef='cc:occupation']" />
<transform process="joinArrays" xpath=".//cml:array[@dictRef='cc:eigenvalues']" />
<transform process="addAttribute" xpath=".//cml:array[@dictRef='x:floatArr']" name="cmlx:idx" value="$string(../cml:scalar[@dictRef='cc:serial'])" />
<transform process="joinArrays" xpath=".//cml:array" key="$string(@cmlx:idx)" />
<transform process="createMatrix" xpath="." from=".//cml:array[@dictRef='x:floatArr']" dictRef="g:orbitalcoeff" />
<transform process="pullup" repeat="2" xpath=".//cml:array" />
<transform process="pullup" repeat="3" xpath=".//cml:matrix" />
<transform process="delete" xpath=".//cml:scalar[@dictRef='cc:serial']" />
<transform process="delete" xpath="(.//cml:module[@cmlx:templateRef='coeff'])[position() > 1]" />
<transform process="addChild" xpath="." elementName="cml:list" dictRef="x:label" />
<transform process="move" to=".//cml:list[@dictRef='x:label']" xpath=".//cml:scalar[@dictRef='x:label']" />
<transform process="delete" xpath=".//cml:list[count(*)=0]" />
<transform process="delete" xpath=".//cml:list[count(*)=0]" />
<transform process="delete" xpath=".//cml:module[count(*)=0]" />