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hardware ​

Implementation level ​

TypeStatus
CML extraction template
HTML5 representation

Template attributes ​

AttributeValue
sourceGROMACS log
idhardware
nameHardware section
pattern\s*Detecting\sCPU\sSIMD\sinstructions.*
pattern2\s*Running\s*on.*node.*
pattern3\s*Hardware\sdetected\son\shost.*
endPattern.*GPUs\sauto-selected.*
endPattern2\s*#.*:.*$\s*$\s*
endOffset2
repeat*
xml:basejob/hardware.xml

Comment ​

Running on 1 node with total 6 cores, 6 logical cores, 1 compatible GPU
Hardware detected on host XXXX (the node of MPI rank 0):
  CPU info:
    Vendor: Intel
    Brand:  Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz
    Family: 6   Model: 79   Stepping: 1
    Features: aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3
  Hardware topology: Only logical processor count
  GPU info:
    Number of GPUs detected: 1
    #0: NVIDIA Tesla P100-PCIE-16GB, compute cap.: 6.0, ECC: yes, stat: compatible

Input ​

Detecting CPU SIMD instructions.
Present hardware specification:
Vendor: GenuineIntel
Brand:  Intel(R) Xeon(R) CPU E5-2697 v2 @ 2.70GHz
Family:  6  Model: 62  Stepping:  4
Features: aes apic avx clfsh cmov cx8 cx16 f16c htt lahf_lm mmx msr nonstop_tsc pcid pclmuldq pdcm pdpe1gb popcnt pse rdrnd rdtscp sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic
SIMD instructions most likely to fit this hardware: AVX_256
SIMD instructions selected at GROMACS compile time: AVX_256


4 GPUs detected:
  #0: NVIDIA Tesla K20m, compute cap.: 3.5, ECC: yes, stat: compatible
  #1: NVIDIA Tesla K20m, compute cap.: 3.5, ECC: yes, stat: compatible
  #2: NVIDIA Tesla K20m, compute cap.: 3.5, ECC: yes, stat: compatible
  #3: NVIDIA Tesla K20m, compute cap.: 3.5, ECC: yes, stat: compatible

4 GPUs auto-selected for this run.
Mapping of GPUs to the 4 PP ranks in this node: #0, #1, #2, #3

Output text ​

xml
<comment class="example.output" id="hardware">
        <module cmlx:templateRef="hardware">
             <list dictRef="hardware">
                <scalar dataType="xsd:string" dictRef="gm:hardware">Detecting CPU SIMD instructions.</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">Present hardware specification:</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">Vendor: GenuineIntel</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">Brand:  Intel(R) Xeon(R) CPU E5-2697 v2 @ 2.70GHz</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">Family:  6  Model: 62  Stepping:  4</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">Features: aes apic avx clfsh cmov cx8 cx16 f16c htt lahf_lm mmx msr nonstop_tsc pcid pclmuldq pdcm pdpe1gb popcnt pse rdrnd rdtscp sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">SIMD instructions most likely to fit this hardware: AVX_256</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">SIMD instructions selected at GROMACS compile time: AVX_256</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">4 GPUs detected:</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">#0: NVIDIA Tesla K20m, compute cap.: 3.5, ECC: yes, stat: compatible</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">#1: NVIDIA Tesla K20m, compute cap.: 3.5, ECC: yes, stat: compatible</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">#2: NVIDIA Tesla K20m, compute cap.: 3.5, ECC: yes, stat: compatible</scalar>
                <scalar dataType="xsd:string" dictRef="gm:hardware">#3: NVIDIA Tesla K20m, compute cap.: 3.5, ECC: yes, stat: compatible</scalar>
                <scalar dataType="xsd:integer" dictRef="gm:numProcGPU">4</scalar>
                <scalar dataType="xsd:integer" dictRef="gm:numRanks">4</scalar>
             </list>
          </module>
    </comment>

Output text ​

xml
<comment class="example.output" id="hardware2">
     <module cmlx:templateRef="hardware">
         <list dictRef="hardware">
            <scalar dataType="xsd:string" dictRef="gm:hardware">Running on 1 node with total 6 cores, 6 logical cores, 1 compatible GPU</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">Hardware detected on host XXXX (the node of MPI rank 0):</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">CPU info:</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">Vendor: Intel</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">Brand:  Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">Family: 6   Model: 79   Stepping: 1</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">Features: aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">Hardware topology: Only logical processor count</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">GPU info:</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">Number of GPUs detected: 1</scalar>
            <scalar dataType="xsd:string" dictRef="gm:hardware">#0: NVIDIA Tesla P100-PCIE-16GB, compute cap.: 6.0, ECC: yes, stat: compatible</scalar>
         </list>
      </module>
    
    </comment>

Template definition ​

xml
<templateList>  <template pattern="\s*Detecting\sCPU\sSIMD\sinstructions.*" pattern2=".*GPUs\sdetected.*" pattern3="\s*Running\s*on.*node.*" pattern4="\s*Hardware\sdetected\son\shost.*" endPattern="\s*" endPattern2="~" endOffset="0" repeat="*">    <record repeat="*">&#123;X,gm:hardware&#125;</record>
        </template>  <template pattern=".*GPUs\sauto-selected.*" endPattern="\s*" endPattern2="~">    <record repeat="*">&#123;I,gm:numProcGPU&#125;GPUs\sauto-selected.*</record>    <record>\s*Mapping\sof\sGPUs\sto\sthe&#123;I,gm:numRanks&#125;.*ranks\sin\sthis\snode:.*</record>
        </template>  <transform process="addChild" xpath="." elementName="cml:list" dictRef="hardware" />  <transform process="moveRelative" xpath=".//cml:scalar" to="../../../cml:list[@dictRef='hardware']" />  <transform process="addChild" xpath="." elementName="cml:scalar" dictRef="gm:numProcGPU" value="$string(replace(//cml:scalar[@dictRef='gm:hardware' and contains(text(), 'Number of GPUs detected')]/text(), 'Number of GPUs detected:\s*', ''))" />  <transform process="delete" xpath=".//cml:scalar[@dictRef='gm:numProcGPU' and text() ='']" />  <transform process="moveRelative" xpath="./cml:scalar" to="../cml:list[@dictRef='hardware']" />  <transform process="delete" xpath=".//cml:scalar[@dictRef='gm:numProcGPU' and empty(text())]" />  <transform process="delete" xpath=".//cml:module" />
    </templateList>