vibrations ​
Implementation level ​
Type | Status |
---|---|
CML extraction template | |
HTML5 representation |
Template attributes ​
Attribute | Value |
---|---|
source | MOPAC log |
id | vibrations |
name | SCF results section |
pattern | \s*\#{10,}\s*$\s*\#\s+\#\s*$\s*\#\s*Normal\smode\sanalysis\s*\#\s* |
endPattern | (?!\s*\#+).*$\s*\#{10,}\s* |
endPattern2 | (?!\s*\*+).*$\s*\*{10,} |
endPattern3 | ~ |
offset | 1 |
endOffset | 1 |
repeat | * |
xml:base | vibrations/normal.mode.analysis.xml |
Input ​
####################################
# #
# Normal mode analysis #
# #
####################################
ORIENTATION_ATOM_X:ANGSTROMS[042]=
4.8790953800000 6.8880495400000 3.5648869000000
3.7138746600000 6.9103490400000 2.6514257900000
4.5022436300000 7.2699278600000 4.4734766200000
2.6452997300000 6.1107610300000 3.3142558000000
4.0984309700000 6.4873019700000 1.7158946600000
3.4791670300000 7.9986289800000 2.4886888400000
0.4511955600000 1.2331308600000 2.9221720800000
2.9411642700000 5.5277664100000 4.1552267900000
1.2211612100000 6.5282494100000 3.0699877400000
1.5406063900000 1.5763933300000 2.6369151000000
1.7241128600000 5.3133201900000 2.4142533200000
0.5226132100000 6.1341378500000 3.8105266900000
0.8354992600000 7.3426486200000 2.4263760900000
2.5887558500000 1.9395349200000 2.2598835900000
ISOTOPIC_MASSES[014]=
15.9994 12.0110 1.0079 12.0110 1.0079 1.0079 15.9994 1.0079 12.0110 12.0110
15.9994 1.0079 1.0079 15.9994
ROTAT_CONSTS:CM(-1)[3]= 0.111213061898167 0.021262684715955 0.018722232409056
PRI_MOM_OF_I:10**(-40)*GRAM-CM**2[3] 251.704017199197267 1316.521164600933844 1495.162213201219402
ZERO_POINT_ENERGY:KCAL/MOL= 59.540109260883582
VIB._FREQ:CM(-1)[042]=
7.42 63.77 97.27 103.16 180.22 218.40 369.82 387.56 433.15 547.48
549.82 731.16 794.01 857.44 889.13 922.32 971.28 1030.73 1082.00 1120.48
1175.58 1197.35 1257.57 1297.15 1324.82 1355.16 1382.29 1401.76 1479.48 2302.62
2595.05 2623.64 2636.44 2723.00 2734.25 2806.12 5550.44 7653.86 -8881.37 3513.08
7618.15 -8992.75
NORMAL_MODES[01764]=
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#Warning: Hessian matrix is mass-weighted.
HESSIAN_MATRIX:MILLIDYNES/ANGSTROM/SQRT(MASS(I)*MASS(J))[00903]=
# Lower half triangle only
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1.7241128600000 5.3133201900000 2.4142533200000
0.5226132100000 6.1341378500000 3.8105266900000
0.8354992600000 7.3426486200000 2.4263760900000
2.5887558500000 1.9395349200000 2.2598835900000
INT_FORCE_CONSTS:MILLIDYNES/ANGSTROM[042]=
4.5645410755178 1.5525260099547 4.6361005960934
6.5367094459118 6.6634334816827 6.9465401321844
1.2623867028731 0.8036393179373 3.3396949553495
9.2415428514939 5.0197256317006 6.1318207362547
1.1388485164591 1.0924516314034 3.2580158956954
0.9680480988609 3.5900517394294 0.8027839582553
13.0645198169575 1.7246114563581 1.3621558320583
1.0975210281258 1.6572495135095 2.9766282362749
7.6589829924599 6.2061840168736 5.2118980242193
22.8917903613950 3.8684133784471 3.6568894084637
2.2558343072440 4.3499290506484 3.1255536857275
2.3576226148127 0.9850680740654 2.2074237046969
1.1028632320838 2.4460314435182 1.6845745401977
12.6722057395917 1.8817485430483 1.9486175511940
CPU_TIME:SECONDS[1]= 0.38
END OF MOPAC FILE
*******************************************************************************
Output text ​
xml
<comment class="example.output" id="vibrations">
<module cmlx:templateRef="vibrations">
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</module>
</comment>
Template definition ​
xml
<templateList> <template pattern="\s*VIB._FREQ:CM\(\-1\).*" endPattern="\s*[a-zA-Z\#].*" endOffset="0"> <record /> <record repeat="*" makeArray="true">{1_10F,cc:frequency}</record>
</template> <template pattern="\s*NORMAL_MODES.*=" endPattern="\s*[a-zA-Z\#].*" endOffset="0"> <record /> <record repeat="*" makeArray="true">{1_10F,cc:displacement}</record>
</template> <template pattern="\s*VIB._T_DIP:ELECTRONS.*" endPattern="\s*[a-zA-Z\#].*" endOffset="0"> <record /> <record repeat="*" makeArray="true">{1_10F,mp:transitiondipole}</record>
</template>
</templateList>
<transform process="move" xpath=".//cml:array" to="." />
<transform process="delete" xpath=".//cml:module" />